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A Novel Grid-Based Visualization Approach for Metabolic Networks with Advanced Focus&Context View\ud

机译:具有高级焦点和上下文视图的新型基于网格的新陈代谢网络可视化方法\ ud

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摘要

The universe of biochemical reactions in metabolic pathways can be modeled as a complex network structure augmented with domain specific annotations. Based on the functional properties of the involved reactions, metabolic networks are often clustered into so-called pathways inferred from expert knowledge. To support the domain expert in the exploration and analysis process, we follow the well-known Table Lens metaphor with the possibility to select multiple foci. In this paper, we introduce a novel approach to generate an interactive layout of such a metabolic network taking its hierarchical structure into account and present methods for navigation and exploration that preserve the mental map. The layout places the network nodes on a fixed rectilinear grid and routes the edges orthogonally between the node positions. Our approach supports bundled edge routes heuristically minimizing a given cost function based on the number of bends, the number of edge crossings and the density of edges within a bundle.\ud
机译:可以将代谢途径中生化反应的整个过程建模为一个复杂的网络结构,并添加特定域注释。基于所涉及反应的功能性质,代谢网络通常被聚类为从专家知识中推断出的所谓途径。为了在探索和分析过程中为领域专家提供支持,我们遵循众所周知的“台镜”隐喻,可以选择多个焦点。在本文中,我们介绍了一种新颖的方法来生成此类代谢网络的交互式布局,同时考虑了其层次结构,并介绍了保存思维导图的导航和探索方法。布局将网络节点放置在固定的直线网格上,并在节点位置之间正交布线边缘。我们的方法支持基于折弯的数量,边缘交叉的数量和束中边缘的密度,试探性地将束缚的边缘路线试探性地最小化给定的成本函数。

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